Whole Genome Phylogeny using SVD

• Presentations
• ISMB 2001 Poster (ppt )
• Papers and Manuscripts
• Integrated Gene and Species Phylogenies from Unaligned Whole Genome Protein Sequence
• Bioinformatics 18: 100-108 (January 2002) pdf
• A Comprehensive Vertebrate Phylogeny using Vector Representations of Protein Sequences from Whole Genomes
• Molecular Biology and Evolution 17: 554-562 (April 2002) pdf
• A Comprehensive Whole Genome Bacterial Phylogeny using Correlated Peptide Motifs defined in a High Dimensional Vector Space
  • Journal of Bioinformatics and Computational Biology (October 2003) pdf & supplementary info
    
• A Whole Genome Phylogeny for Plant Virus Family Tombusviridae
• Archives of Virology (March 2004) pdf
• An SVD-based Comparison of Nine Whole Eukaryotic Genomes Supports a Coelomate Rather than Ecdysozoan Lineage (December 2004) pdf